The seqWell Scope is your source for reliable content on NGS technology. This issue focuses on library prep that optimizes gene editing QC.
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A Quarterly Newsletter

Information in NGS technology and research

June 2023 | Vol. 02 Issue 2

    Hello there, 

     

    Welcome to the latest edition of The seqWell Scope!  

     

    The advent of gene editing technology is perhaps the most powerful and defining development in the last decade of biology. Since the original discovery and publication of CRISPR-based genome editing in 2013, applications related to this crucial tool have grown to encompass whole new areas of life science discovery, from crop engineering to the creation of life-saving medicines.

     

    Two areas where seqWell is working to provide solutions that accelerate and improve the use of sequencing in CRISPR-related research and development are screening of synthetic gene editing constructs and gene editing QC. 

     

    Synthetic Constructs: In many cases, researchers need to identify and validate synthetic constructs that express Cas9 or DNA-modifying proteins (and their associated payload) in targeted cells occurs early in gene editing research. Our ExpressPlex™ Library Prep Kit, highlighted below, greatly simplifies this step. I encourage you to check out our Plasmid Sequencing page and our recently-hosted webinar with Octant Bio for a view of how this innovation has made a real-world impact.

     

    Gene Editing QC: When cells are modified with gene editing technologies like CRISPR-Cas9, the resulting modified sequences can alter in unintended ways. Especially for potential therapeutic applications, the ability to measure and characterize the on- and off-target effects of a particular gene editing event is crucial. To address this, we created the Tagify UMI transposase-based set, which is being used in powerful gene editing QC methods like UDiTaS and RGEN-seq. You can learn more about this versatile new kit in our webinar with Georgia Giannoukos, Ph.D., from Editas Medicine, linked below.

     

    Our team is excited to help accelerate the real-world applications of gene editing technology with sequencing tools and workflows that address different needs in this incredible new area. You can learn more about these efforts in the links below. 

    Please reach out if you are interested in learning more!

     

    Best regards,

    Joe-Mellor-Signature

    Joseph Mellor, Ph.D.

    Co-Founder and CSO

      Joe-mellor-2-600x400

      In this issue:

      • Your input is needed. Help us deliver content relevant to your research.
      • Video: "Assessing CRISPR On-Target Editing and Structural Changes with UDiTaS™ using Tagify™ Reagents" (30 minutes)
      • Product spotlight: ExpressPlex™ Library Prep Kit (Your ticket to speed, throughput, efficiency)
      • Blog: "Upstream, Downstream, or Both: A Powerful Tool for Gene Editing QC" (5-minute read)
      • Blog: "Improve Gene Editing with Tn5 Transposase" (5-minute read)
      • Company News and Upcoming Events: Meet our new Director of R&D

      FEATURED VIDEO

      CRISPR V01 VIDEO THUMBNAIL 1200px-675px

      In this webinar, we highlight the effectiveness of Editas Medicine's Uni-Directional Targeted Sequencing methodology (UDiTaS) in measuring structural changes resulting from CRISPR-Cas9 editing. We also discuss challenges with producing a large-scale supply of Tn5 transposase complexes to create UDiTaS libraries, and how seqWell provided the solution with the Tagify custom-loaded Tn5 transposase.

      PRODUCT SPOTLIGHT

      EP Workflow Video - Request Demo
      Request ExpressPlex Demo

      ExpressPlex™ Library Prep Kit

      This kit is a transformational one-step library preparation tool for multiplexed plasmid and amplicon sequencing. It can also be used as an upstream gene editing QC method. Key features of ExpressPlex include:

      • Auto-normalizing 90-minute library prep 
      • Flexible batch sizes (8-768 samples)
      • Automation-friendly

      FEATURED BLOGS

      Upstream, Downstream, or Both: A Powerful Tool for Gene Editing QC

      MAY 23 Upstream  Downstream V01 BLOG IMAGE 1200px 600px

      NGS is a particularly powerful tool for gene editing QC. The addition of transposase-based methods enhances the safety and efficacy of gene editing resulting in more effective treatment options for a wide range of disorders.

       

      This blog outlines ExpressPlex and Tagify, two transposase-based library prep tools for upstream and downstream QC. By using these tools in tandem, researchers can better control editing reagents and the overall editing process. 

      Read the Blog

      Improve Gene Editing with Tn5 Transposase

      APR 23 Gene Editing BLOG IMAGE V01 1200px-600px

      Thanks to CRISPR and other gene editing methods like it, scientists can now "fix" genetic mutations with a simplicity that is comparable to the Find and Replace tool in Word documents. However, safety remains a major concern.

       

      This blog explores how Tn5 transposase is a powerful tool for measuring the fidelity and QC of gene editing while adhering to FDA's safety guidance. 

      Read the Blog

      Become a seqWell subscriber!

      Subscribe to our biweekly blog to stay up-to-date on the diverse uses of NGS and all the ways seqWell remains at the forefront of our industry. 

      COMPANY NEWS AND EVENTS

      Meet Our New Director of R&D

      Maura Costello was recently promoted to seqWell's Director of R&D.

       

      For the past two years, she was Team Leader of our R&D department, where she made substantial contributions to the development of our novel library prep methods and NGS solutions.

      maura-lab

      Prior to joining seqWell, Maura dedicated 15 years to the field as an R&D molecular biologist, where she garnered expertise in technology and assay development for NGS and genomics.

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