This issue of The seqWell Scope discusses library prep solutions for high-throughput plasmid sequencing.
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A Quarterly Newsletter

Information on NGS Technology and Research

September 2023 | Vol. 02 Issue 3

    Hello there, 

     

    Welcome to the latest edition of the seqWell Scope!

     

    This quarter we are highlighting plasmids, which are the bread and butter for many areas of life science research. These circular DNA molecules, which can be constructed with a diverse array of sequence features, have been a core tool of molecular biology for decades. Plasmids are the foundation for the new and evolving field of synthetic biology. In modern therapeutic areas, like gene editing with CRISPR-based technology, researchers use plasmids to create the DNA payloads that are then leveraged to engineer genomes and cells. 

     

    Utilizing plasmids for life sciences R&D often requires sequencing multiple synthetic constructs to identify clone sequences that have desired properties, or to confirm that the sequence of a synthesized DNA clone is correct for downstream applications. Plasmid sequencing has historically been performed with Sanger sequencing, but today’s generation of sequencing technologies can outperform this approach by enabling the sequencing of hundreds, even thousands, of individual clone sequences in a single run. 

     

    In this issue, we explore the many dimensions of high-throughput plasmid sequencing and focus on the innovations that are accelerating the adoption of modern sequencing platforms, such as Illumina-based sequencing in the area of high-throughput plasmid and synthetic clone sequencing. The articles and webinar below also highlight the powerful capabilities of seqWell’s ExpressPlex Library Prep Kits, the new paradigm of simplicity for large-scale workflows like plasmid and amplicon sequencing as well as advanced automation approaches for creating scalable workflows in synthetic biology. 

     

    I hope you enjoy this edition of the seqWell Scope, and if you would like to learn more please reach out to us any time. I also encourage you to connect with our team at the upcoming Festival of Genomics Boston (Booth #34) and American Society of Human Genetics 2023 Meeting in Washington, DC (Booth #1210). 

    Happy sequencing! 

     

    Joe-Mellor-Signature

    Joseph Mellor, Ph.D.

    Co-Founder and CSO

      Joe-mellor-2-600x400

      IN THIS ISSUE

      • Video: "Driving High-Throughput NGS Library Prep with Automated Liquid Handling" (27 min)
      • Product spotlight: ExpressPlex™ Library Prep Kit
      • Application Note: High-Throughput NGS Library Prep for Plasmids and Amplicons Using ExpressPlex on the Tecan Fluent®
      • Blog: "Avoid Costly Errors in NGS Sample Handling and Library Prep" (5 min)
        Blog: "The Importance of Automation in Plasmid Sequencing
        " (5 min)
      • Blog: "Enabling High-Throughput Biology with New Technologies for Synthetic Construct Sequencing" (15 min)
      • Company News: Our enhanced Services pipeline

      FEATURED VIDEO

      Driving High Throughput NGS Library Prep with Automated Liquid Handling

      In this video, we demonstrate how you can go from plasmids to sequenced data in only 24 hours with seqWell's ExpressPlex™ Library Prep Kit on SPT Labtech's firefly® liquid handler. This discussion highlights data from our joint application note.

      PRODUCT SPOTLIGHT

      ExpressPlex™ Library Prep Kit

      This transformational one-step library prep tool for multiplexed plasmid and amplicon sequencing was designed to support automation and flexible reaction volumes. 

      • Virtually cross-talk free
      • Fragmentation, barcoding, and amplification in one step

      • 1,536+ samples prepped and sequenced in 24 hours
      Request ExpressPlex Demo

      APPLICATION NOTE

      SW2023_ExpressPlex + SPT_workflow

      In this application note, we describe the automation of ExpressPlex on the Tecan Fluent® liquid handler to create compact and cost-efficient methods for fast screening of synthetic constructs.

      FEATURED BLOGS

      Avoid Costly Errors in NGS Sample Handling and Library Prep

      SEPT 23 BLOG IMAGE - Avoid Errors V02 300dpi 1200px 600px

      This blog provides evidence on how to mitigate the errors that commonly occur during NGS experiments. We also highlight how ExpressPlex is easily automated to circumvent challenges associated with manual pipetting. 

      The Importance of Automation in Plasmid Sequencing

      Automation 3 Steps Ver 1 BLOG IMAGE 1200px-600px-01

      In this blog we outline challenges facing high-throughput plasmid production and describe the benefits of automation. We also highlight how ExpressPlex is compatible with rolling-circle amplification. 

      Enabling High-Throughput Biology with New Technologies for Synthetic Construct Sequencing

      MAR 23 Octant webinar V01 BLOG IMAGE 1200px-600px

      This blog provides an overview of our webinar collaboration with Octant Bio, a drug discovery company located in Emeryville, CA. Read the blog or watch this 30-minute video to discover how ExpressPlex dramatically improved and accelerated Octant's high-throughput plasmid sequencing platform.

      Become a seqWell subscriber!

      Subscribe to our biweekly blog to stay up-to-date on the diverse uses of NGS and all the ways seqWell remains at the forefront of our industry. 

      COMPANY NEWS

      Our Enhanced Services Pipeline

      The introduction of ExpressPlex into our services pipeline has changed the game when it comes to workflow simplification. We now offer faster turnaround while maintaining the same high-quality, Illumina-based sequencing.

      Services3

      You can take advantage of our trial offer: $14.50 per sample for the first full plate of plasmids or amplicons, assembly included. Click here to skip the line and request a quote for services now, or check out ExpressPlex if you would like to do what we do in your own lab.

      Please share our newsletter with your colleagues and be sure to follow us on social media.

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